Pattern (ProcessCore)

Pattern Module

Namespace: ProcessCore.Helper
Assembly: ProcessCore.dll
Parent Module: Regex

Nested modules

Modules	Description
MatchGroups

Functions and values

Function or value	Description
`AutoGeneratedTableName` Full Usage: `AutoGeneratedTableName` Returns: `string`	This pattern is used to match auto-generated table names. Mainly used in ArcAssay.addTable(). Default tables will get such a name. Will match "New Table 10" and will capture the number as `number` group. Returns: `string`
`CommentPattern` Full Usage: `CommentPattern` Returns: `string`	This pattern is used to match Comment column and capture the comment key as `commentKey` group. Returns: `string`
`ExcelNumberFormat` Full Usage: `ExcelNumberFormat` Returns: `string`	Used to get unit name from Excel numberFormat: 0.00 "degree Celsius" --> degree Celsius Returns: `string`
`IOTypePattern` Full Usage: `IOTypePattern` Returns: `string`	This pattern is used to match both Input and Output columns and capture the IOType as `iotype` group. Returns: `string`
`IdPattern` Full Usage: `IdPattern` Returns: `string`	This pattern is only used to remove any leftover #id attributes from previous Swate version. `"Parameter [biological replicate#2]"` This #id is deprecated but the pattern can still be used to remove any from files. Was deprecated before 2023. Returns: `string`
`InputPattern` Full Usage: `InputPattern` Returns: `string`	This pattern is used to match Input column and capture the IOType as `iotype` group. Returns: `string`
`OutputPattern` Full Usage: `OutputPattern` Returns: `string`	This pattern is used to match Output column and capture the IOType as `iotype` group. Returns: `string`
`ReferenceColumnPattern` Full Usage: `ReferenceColumnPattern` Returns: `string`	Hits Term Source REF and Term Accession Number column headers Example 1: "Term Source REF (MS:1003022)" Example 2: "Term Accession Number (MS:1003022)" the id part "MS:1003022" is captured as `id` group. Returns: `string`
`SquaredBracketsTermNamePattern` Full Usage: `SquaredBracketsTermNamePattern` Returns: `string`	This pattern captures characters between squared brackets, without id: Parameter [biological replicate#2] -> [biological replicate] TODO: Could be redesigned to use capture groups, then it could return inner without brackets Returns: `string`
`TermAccessionNumberColumnPattern` Full Usage: `TermAccessionNumberColumnPattern` Returns: `string`	Hits Term Source REF column header Example 1: "Term Accession Number (MS:1003022)" the id part "MS:1003022" is captured as `id` group. Returns: `string`
`TermAnnotationShortPattern` Full Usage: `TermAnnotationShortPattern` Returns: `string`	Hits term accession, without id: ENVO:01001831 Returns: `string`
`TermAnnotationURIPattern` Full Usage: `TermAnnotationURIPattern` Returns: `string`	Regex pattern is designed to hit only Foundry-compliant URIs. Returns: `string`
`TermAnnotationURIPattern_MS_RO_PO` Full Usage: `TermAnnotationURIPattern_MS_RO_PO` Returns: `string`	Watch this closely, this could hit some edge cases we do not want to cover. Returns: `string`
`TermAnnotationURIPattern_lessRestrictive` Full Usage: `TermAnnotationURIPattern_lessRestrictive` Returns: `string`	Watch this closely, this could hit some edge cases we do not want to cover. Returns: `string`
`TermAnnotationURIPattern_stringTSR` Full Usage: `TermAnnotationURIPattern_stringTSR` Returns: `string`	Returns: `string`
`TermColumnPattern` Full Usage: `TermColumnPattern` Returns: `string`	This pattern matches any column header starting with some text, followed by one whitespace and a term name inside squared brackets. Captures column type as named group: "termcolumntype" (e.g. Component, Characteristic .. ). Captures term name as named group: "termname" (e.g. instrument model). Exmp. 1: Parameter [instrument model] --> termcolumntype: Parameter; termname: instrument model Exmp. 2: Characteristic [species] --> termcolumntype: Characteristic; termname: species Returns: `string`
`TermSourceREFColumnPattern` Full Usage: `TermSourceREFColumnPattern` Returns: `string`	Hits Term Accession Number column header Example 1: "Term Source REF (MS:1003022)" the id part "MS:1003022" is captured as `id` group. Returns: `string`
`UnitPattern` Full Usage: `UnitPattern` Returns: `string`	Hits Unit column header Returns: `string`
`handleGroupPatterns pattern` Full Usage: `handleGroupPatterns pattern` Parameters: pattern : `string` Returns: `string`	pattern : `string` Returns: `string`